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i have a web application which connects to apache phoenix; therefore i added phoenix-5.0.0-HBase-2.0-client.jar to dependencies and it works perfectly in intellij on local but when i start tomcat in server i get this error message:

org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[]]
                at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:167)
                at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:743)
                at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:719)
                at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:714)
                at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1125)
                at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1859)
                at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
                at java.util.concurrent.FutureTask.run(FutureTask.java:266)
                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
                at java.lang.Thread.run(Thread.java:748)
        Caused by: java.lang.NoSuchMethodError: org.glassfish.jersey.servlet.internal.Utils.store(Lorg/glassfish/jersey/server/ResourceConfig;Ljavax/servlet/ServletContext;)V
                at org.glassfish.jersey.servlet.init.JerseyServletContainerInitializer.addServletWithExistingRegistration(JerseyServletContainerInitializer.java:310)
                at org.glassfish.jersey.servlet.init.JerseyServletContainerInitializer.onStartupImpl(JerseyServletContainerInitializer.java:170)
                at org.glassfish.jersey.servlet.init.JerseyServletContainerInitializer.onStartup(JerseyServletContainerInitializer.java:143)
                at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5154)
                at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
                ... 10 more
07-Feb-2021 09:10:32.298 SEVERE [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Error deploying web application directory 
        java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[]]
                at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:747)
                at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:719)
                at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:714)
                at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1125)
                at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1859)
                at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
                at java.util.concurrent.FutureTask.run(FutureTask.java:266)
                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

and it gets resolved when i remove phoenix-5.0.0-HBase-2.0-client.jar from projects lib folder! servers operating system is centos. i dont use spring boot, gradle or maven.

mohaddese abbasi
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  • It seems you have mismatched version of Jersey. Did you download the jar from [Phoenix Website](https://phoenix.apache.org/download.html)? That distribution contains the fattest jar I've ever seen (135 MiB) with many dependencies embedded. Please [edit](https://stackoverflow.com/posts/66085846/edit) your question and add the list of the other libraries in `WEB-INF/lib`. – Piotr P. Karwasz Feb 07 '21 at 09:21
  • @PiotrP.Karwasz tnx u for your answer; i added other jar files to lib and i still get the same error message. – mohaddese abbasi Feb 07 '21 at 10:38
  • You misunderstood my comment: `phoenix-5.0.0-HBase-2.0-client.jar` contains many other jars (hence it is a **fat jar**). Please add to the question which other jars you have in `WEB-INF/lib`, so we can point you to which ones conflict with `phoenix-5.0.0-HBase-2.0-client.jar`. – Piotr P. Karwasz Feb 07 '21 at 11:29
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    @PiotrP.Karwasz yes i misunderstood your comment. i added the file names to the question; unfortunately it's a long list! – mohaddese abbasi Feb 07 '21 at 12:13

1 Answers1

4

Welcome to dependency hell! The jar file phoenix-5.0.0-HBase-2.0-client.jar contains the equivalent of 170 jar files (listed below as Maven groupId:artifactId:version). Specifically it contains Jersey 1.19, while you have already Jersey 2.15. Whenever you have multiple version of the same library on your classpath you will get linkage errors as the one in your question. One Jersey library (probably 2.15) tried to load a dependency, but the dependency came from another version (probably 1.19).

The solution is not to use fat jars like phoenix-5.0.0-HBase-2.0-client.jar, but use Maven or another system to deal with dependencies. They might still get it wrong (e.g. the com.sun.xml.bind and org.glassfish.jaxb's version of jaxb-core contain the same classes, but Maven does not know that), but the result is much better, than manual dependency management.

In your case, if you just need the org.apache.phoenix.jdbc.PhoenixDriver you need to include the phoenix-core artifact and let Maven do the rest.

You'll end up with many useless dependencies (e.g. you can immediately exclude the jetty-* dependencies, since those are the libraries of the Jetty Servlet container, as well as hbase-server if you are connecting to an external one), but hopefully there will be no conflicts.

com.clearspring.analytics:stream:2.9.5
com.fasterxml.jackson.core:jackson-annotations:2.4.0
com.fasterxml.jackson.core:jackson-core:2.4.0
com.fasterxml.jackson.core:jackson-databind:2.4.0
com.fasterxml.jackson.jaxrs:jackson-jaxrs-base:2.7.8
com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider:2.7.8
com.fasterxml.jackson.module:jackson-module-jaxb-annotations:2.7.8
com.fasterxml.woodstox:woodstox-core:5.0.3
com.github.stephenc.findbugs:findbugs-annotations:1.3.9-1
com.github.stephenc.jcip:jcip-annotations:1.0-1
com.google.code.gson:gson:2.8.1
com.google.guava:guava:13.0.1
com.google.protobuf:protobuf-java-util:3.3.0
com.google.protobuf:protobuf-java:2.5.0
com.google.re2j:re2j:1.1
com.jcraft:jsch:0.1.54
com.nimbusds:nimbus-jose-jwt:4.41.1
com.salesforce.i18n:i18n-util:1.0.4
com.squareup.okhttp:okhttp:2.4.0
com.squareup.okio:okio:1.4.0
com.sun.jersey.contribs:jersey-guice:1.19
com.sun.jersey:jersey-client:1.19
com.sun.jersey:jersey-core:1.19
com.sun.jersey:jersey-json:1.19
com.sun.jersey:jersey-server:1.19
com.sun.jersey:jersey-servlet:1.19
com.tdunning:json:1.8
com.thoughtworks.paranamer:paranamer:2.3
commons-beanutils:commons-beanutils:1.9.3
commons-cli:commons-cli:1.4
commons-codec:commons-codec:1.7
commons-collections:commons-collections:3.2.2
commons-daemon:commons-daemon:1.0.13
commons-io:commons-io:2.5
commons-lang:commons-lang:2.6
commons-logging:commons-logging:1.2
commons-net:commons-net:3.1
io.dropwizard.metrics:metrics-core:3.1.0
io.netty:netty-all:4.1.17.Final
io.netty:netty:3.10.5.Final
javax.annotation:javax.annotation-api:1.2
javax.servlet.jsp:javax.servlet.jsp-api:2.3.1
javax.servlet:javax.servlet-api:3.1.0
javax.validation:validation-api:1.1.0.Final
javax.ws.rs:javax.ws.rs-api:2.0.1
javax.ws.rs:jsr311-api:1.1.1
javax.xml.bind:jaxb-api:2.2.11
jline:jline:2.11
log4j:log4j:1.2.17
net.minidev:accessors-smart:1.1
net.minidev:json-smart:2.2.1
org.antlr:antlr-runtime:3.5.2
org.apache.avro:avro-ipc:1.7.3
org.apache.avro:avro:1.7.7
org.apache.commons:commons-collections4:4.1
org.apache.commons:commons-compress:1.4.1
org.apache.commons:commons-configuration2:2.1.1
org.apache.commons:commons-crypto:1.0.0
org.apache.commons:commons-csv:1.0
org.apache.commons:commons-lang3:3.6
org.apache.commons:commons-math3:3.6.1
org.apache.curator:curator-client:2.12.0
org.apache.curator:curator-framework:2.12.0
org.apache.curator:curator-recipes:2.12.0
org.apache.flume:flume-ng-configuration:1.4.0
org.apache.flume:flume-ng-core:1.4.0
org.apache.flume:flume-ng-sdk:1.4.0
org.apache.hadoop:hadoop-annotations:3.0.0
org.apache.hadoop:hadoop-auth:3.0.0
org.apache.hadoop:hadoop-client:3.0.0
org.apache.hadoop:hadoop-common:3.0.0
org.apache.hadoop:hadoop-distcp:2.7.4
org.apache.hadoop:hadoop-hdfs-client:3.0.0
org.apache.hadoop:hadoop-hdfs:3.0.0
org.apache.hadoop:hadoop-mapreduce-client-common:3.0.0
org.apache.hadoop:hadoop-mapreduce-client-core:3.0.0
org.apache.hadoop:hadoop-mapreduce-client-jobclient:3.0.0
org.apache.hadoop:hadoop-yarn-api:3.0.0
org.apache.hadoop:hadoop-yarn-common:3.0.0
org.apache.hbase.thirdparty:hbase-shaded-miscellaneous:2.1.0
org.apache.hbase.thirdparty:hbase-shaded-netty:2.1.0
org.apache.hbase.thirdparty:hbase-shaded-protobuf:2.1.0
org.apache.hbase:hbase-annotations:2.0.0
org.apache.hbase:hbase-client:2.0.0
org.apache.hbase:hbase-common:2.0.0
org.apache.hbase:hbase-hadoop-compat:2.0.0
org.apache.hbase:hbase-hadoop2-compat:2.0.0
org.apache.hbase:hbase-http:2.0.0
org.apache.hbase:hbase-mapreduce:2.0.0
org.apache.hbase:hbase-metrics-api:2.0.0
org.apache.hbase:hbase-metrics:2.0.0
org.apache.hbase:hbase-procedure:2.0.0
org.apache.hbase:hbase-protocol-shaded:2.0.0
org.apache.hbase:hbase-protocol:2.0.0
org.apache.hbase:hbase-replication:2.0.0
org.apache.hbase:hbase-server:2.0.0
org.apache.hbase:hbase-zookeeper:2.0.0
org.apache.htrace:htrace-core4:4.2.0-incubating
org.apache.htrace:htrace-core:3.1.0-incubating
org.apache.httpcomponents:httpclient:4.0.1
org.apache.httpcomponents:httpcore:4.0.1
org.apache.kerby:kerb-admin:1.0.1
org.apache.kerby:kerb-client:1.0.1
org.apache.kerby:kerb-common:1.0.1
org.apache.kerby:kerb-core:1.0.1
org.apache.kerby:kerb-crypto:1.0.1
org.apache.kerby:kerb-identity:1.0.1
org.apache.kerby:kerb-server:1.0.1
org.apache.kerby:kerb-simplekdc:1.0.1
org.apache.kerby:kerb-util:1.0.1
org.apache.kerby:kerby-asn1:1.0.1
org.apache.kerby:kerby-config:1.0.1
org.apache.kerby:kerby-pkix:1.0.1
org.apache.kerby:kerby-util:1.0.1
org.apache.kerby:kerby-xdr:1.0.1
org.apache.kerby:token-provider:1.0.1
org.apache.mina:mina-core:2.0.4
org.apache.phoenix:phoenix-core:5.0.0-HBase-2.0
org.apache.phoenix:phoenix-flume:5.0.0-HBase-2.0
org.apache.phoenix:phoenix-pig:5.0.0-HBase-2.0
org.apache.phoenix:phoenix-spark:5.0.0-HBase-2.0
org.apache.tephra:tephra-api:0.14.0-incubating
org.apache.tephra:tephra-core:0.14.0-incubating
org.apache.tephra:tephra-hbase-compat-2.0:0.14.0-incubating
org.apache.twill:twill-api:0.8.0
org.apache.twill:twill-common:0.8.0
org.apache.twill:twill-core:0.8.0
org.apache.twill:twill-discovery-api:0.8.0
org.apache.twill:twill-discovery-core:0.8.0
org.apache.twill:twill-zookeeper:0.8.0
org.apache.yetus:audience-annotations:0.5.0
org.codehaus.jettison:jettison:1.3.8
org.codehaus.woodstox:stax2-api:3.1.4
org.eclipse.jetty:jetty-http:9.3.19.v20170502
org.eclipse.jetty:jetty-io:9.3.19.v20170502
org.eclipse.jetty:jetty-security:9.3.19.v20170502
org.eclipse.jetty:jetty-server:9.3.19.v20170502
org.eclipse.jetty:jetty-servlet:9.3.19.v20170502
org.eclipse.jetty:jetty-util-ajax:9.3.19.v20170502
org.eclipse.jetty:jetty-util:9.3.19.v20170502
org.eclipse.jetty:jetty-webapp:9.3.19.v20170502
org.eclipse.jetty:jetty-xml:9.3.19.v20170502
org.fusesource.leveldbjni:leveldbjni-all:1.8
org.glassfish.hk2.external:aopalliance-repackaged:2.5.0-b32
org.glassfish.hk2.external:javax.inject:2.5.0-b32
org.glassfish.hk2:hk2-api:2.5.0-b32
org.glassfish.hk2:hk2-locator:2.5.0-b32
org.glassfish.hk2:hk2-utils:2.5.0-b32
org.glassfish.hk2:osgi-resource-locator:1.0.1
org.glassfish.jersey.bundles.repackaged:jersey-guava:2.25.1
org.glassfish.jersey.containers:jersey-container-servlet-core:2.25.1
org.glassfish.jersey.core:jersey-client:2.25.1
org.glassfish.jersey.core:jersey-common:2.25.1
org.glassfish.jersey.core:jersey-server:2.25.1
org.glassfish.jersey.media:jersey-media-jaxb:2.25.1
org.glassfish.web:javax.servlet.jsp:2.3.2
org.glassfish:javax.el:3.0.1-b11-SNAPSHOT
org.iq80.snappy:snappy:0.3
org.jamon:jamon-runtime:2.4.1
org.javassist:javassist:3.20.0-GA
org.jruby.jcodings:jcodings:1.0.18
org.jruby.joni:joni:2.1.2
org.jvnet:tiger-types:1.4
org.mortbay.jetty:jetty-util:6.1.26
org.mortbay.jetty:jetty:6.1.26
org.mortbay.jetty:servlet-api:2.5-20110124
org.slf4j:slf4j-api:1.6.4
org.slf4j:slf4j-log4j12:1.7.25
org.xerial.snappy:snappy-java:1.0.5
sqlline:sqlline:1.2.0
Piotr P. Karwasz
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