here is a solution to pad a track while mixing with another track.
Sox : merge two audio files with a pad
$ sox short.ogg -p pad 6 0 | sox - -m long.ogg output.ogg
How to use this command mixing multiple tracks?
For example
audio1.wav (no pad) audio2.wav (2s pad) audio3.wav (2s pad) audio4.wav (3s pad)