This is reposted from my answer at:
How to get .pem file from .key and .crt files?
I was trying to go from godaddy to app engine. What did the trick was using this line in the terminal (mac) to generate the the key and csr:
openssl req -new -newkey rsa:2048 -nodes -keyout name.unencrypted.priv.key -out name.csr
Exactly as is, but replacing name with my domain name (not that it really even mattered)
Also, what follows that is a bunch of questions and I answered all the questions pertaining to common name / organization as www.name.com , and I skipped the pass code and company name by just pressing enter
Then I opened the .csr file, copied it, pasted it in go daddy's csr form, waited for godaddy to approve it, then downloaded it, unzipped it, navigated to the unzipped folder in the terminal and entered:
cat otherfilegodaddygivesyou.crt gd_bundle-g2-g1.crt > name.crt
Then I used these instructions from the post Trouble with Google Apps Custom Domain SSL, which were:
openssl rsa -in privateKey.key -text > private.pem
openssl x509 -inform PEM -in www_mydomain_com.crt > public.pem
exactly as is, except instead of privateKey.key I used name.unencrypted.priv.key, and instead of www_mydomain_com.crt, I used name.crt
Then I uploaded the public.pem to the admin console for the "PEM encoded X.509 certificate",
and uploaded the private.pem for the "Unencrypted PEM encoded RSA private key"..
.. And that finally worked.