I have a coupon affiliate site that is showing 50-100 click throughs a day on Commission Junction and other affiliate sites. A script built into my site records the number of views of each offer and how many clicks. This is equivalent to what the affiliate programs are recording.
The problem is that Google Analytics is showing only a handful of visits and pageviews a day. No where near what my onsite and affiliate programs are showing.
How could this be? What would cause the difference? What is the problem with Google Analytics?