In think both terminologies come from the different perception of graphs and networks. Albert-László Barabási writes in his recent text book.
"In the scientific literature the terms network and graph are used interchangeably:
Network science |
Graph theory |
Network |
Graph |
Node |
Vertex |
Link |
Edge |
Yet, there is a subtle distinction between the two terminologies: the {network, node, link} combination often refers to real systems: The WWW is a network of web documents linked by URLs; society is a network of individuals linked by family, friendship or professional ties; the metabolic network is the sum of all chemical reactions that take place in a cell. In contrast, we use the terms {graph, vertex, edge} when we discuss the mathematical representation of these networks: We talk about the web graph, the social graph (a term made popular by Facebook), or the metabolic graph. Yet, this distinction is rarely made, so these two terminologies are often synonyms of each other."
<tl;dr> Same, same, but different.