You can try something like the following: http://www.tonyspencer.com/2005/01/20/execute-mysql-script-from-java/
public static String executeScript (String dbname, String dbuser,
String dbpassword, String scriptpath, boolean verbose) {
String output = null;
try {
String[] cmd = new String[]{"mysql",
dbname,
"--user=" + dbuser,
"--password=" + dbpassword,
"-e",
"\"source " + scriptpath + "\""
};
System.err.println(cmd[0] + " " + cmd[1] + " " +
cmd[2] + " " + cmd[3] + " " +
cmd[4] + " " + cmd[5]);
Process proc = Runtime.getRuntime().exec(cmd);
if (verbose) {
InputStream inputstream = proc.getInputStream();
InputStreamReader inputstreamreader = new InputStreamReader(inputstream);
BufferedReader bufferedreader = new BufferedReader(inputstreamreader);
// read the output
String line;
while ((line = bufferedreader.readLine()) != null) {
System.out.println(line);
}
// check for failure
try {
if (proc.waitFor() != 0) {
System.err.println("exit value = " +
proc.exitValue());
}
}
catch (InterruptedException e) {
System.err.println(e);
}
}
} catch (Exception e) {
e.printStackTrace();
}
return output;
}