I have a similar problem like forki23 by bring Wix to not overwrite a configuration file during upgrade. I have a config file that should not be overwritten during upgrade, but it should be removed during uninstall. However every solution I find, breaks something else.
If I set NoOverwrite=yes and move the RemoveExistingProducts to InstallFinalize the config file is handled as I wished. However, in this case the shortcut is removed during upgrade for some reason. If I leave RemoveExistingProducts at InstallInitialize, the config file is actually removed during upgrade, however the shortcuts are present.
Why is this happening and is there are way to fix it?
<InstallExecuteSequence>
<RemoveExistingProducts After="InstallInitialize" />
<!-- InstallInitialize causes config-file to disappear during upgrade -->
<!-- InstallFinalize causes shortcuts to disappear during upgrade -->
...
<Property Id="DISABLEADVTSHORTCUTS" Value="1" />
...
<Directory Id="INSTALLLOCATION" Name="MyApp">
<Component Id="MYAPP.EXE" DiskId="1" Guid="...">
<File Id="MYAPP.EXE" Name="MyApp.exe" Source="..." Vital="yes" KeyPath="yes">
<Shortcut Id="startmenuShortcut"
Directory="ProgramMenuDir"
Name="!(loc.ProductName)"
WorkingDirectory='INSTALLLOCATION'
Icon="Icon.ico"
IconIndex="0"
Advertise="yes" />
</File>
<RegistryValue Root="HKLM"
Name="InstallLocation"
Key="$(var.InstallLocationRegistryKey)"
Type="string"
Value="[INSTALLLOCATION]">
</RegistryValue>
</Component>
<Component Id="MYAPP.EXE.CONFIG" DiskId="1" Guid="..." NeverOverwrite="yes">
<File Id="MYAPP.EXE.CONFIG"
Name="MyApp.exe.config"
Source="..."
KeyPath="yes" />
</Component>
...
</Directory>
...
<Directory Id="ProgramMenuFolder">
<Directory Id="ProgramMenuDir" Name="!(loc.ProductPrefix)">
<Component Id="ProgramMenuDir" Guid="...">
<RegistryValue Root="HKCU" Key="SOFTWARE\MyApp"
Type="string" Value="[INSTALLLOCATION]" KeyPath="yes" />
<RemoveFolder Id="ProgramMenuDir" On="uninstall"/>
</Component>
</Directory>
</Directory>
Note A: The config-file is a machine-wide configuration and should apply for all users.
Note B: I'm using WiX 3.7 and the target plattform is Windows 7 and 8.