Matplotlib animating multiple lines and text

Question

Thanks for taking time to read my question, first time I have posted on SO so here goes...

I am plotting time series data in an animation using matplotlib.animation.FuncAnimation

I am plotting more than one line by looping over a list and slicing data from a numpy array. This works fine, but I also want to add text to the plot which is animated and describes the frame number.

I have included sample code below.

I am trying returning a list of line objects and a text object from the animate function. I receive an attribute error when I try to do this:

Exception in Tkinter callback
Traceback (most recent call last):
  File "C:\Python27\lib\lib-tk\Tkinter.py", line 1470, in __call__
    return self.func(*args)
  File "C:\Python27\lib\lib-tk\Tkinter.py", line 531, in callit
    func(*args)
  File "C:\Python27\lib\site-packages\matplotlib\backends\backend_tkagg.py", line 141, in _on_timer
    TimerBase._on_timer(self)
  File "C:\Python27\lib\site-packages\matplotlib\backend_bases.py", line 1117, in _on_timer
    ret = func(*args, **kwargs)
  File "C:\Python27\lib\site-packages\matplotlib\animation.py", line 773, in _step
    still_going = Animation._step(self, *args)
  File "C:\Python27\lib\site-packages\matplotlib\animation.py", line 632, in _step
    self._draw_next_frame(framedata, self._blit)
  File "C:\Python27\lib\site-packages\matplotlib\animation.py", line 652, in _draw_next_frame
    self._post_draw(framedata, blit)
  File "C:\Python27\lib\site-packages\matplotlib\animation.py", line 675, in _post_draw
    self._blit_draw(self._drawn_artists, self._blit_cache)
  File "C:\Python27\lib\site-packages\matplotlib\animation.py", line 688, in _blit_draw
    if a.axes not in bg_cache:
AttributeError: 'list' object has no attribute 'axes'

But, say that I have a list of two line objects, if I return the objects individually, e.g.

return lines[0],lines[1], timetext

I receive no errors.

Any ideas?

Cheers Vanessa

import numpy
import matplotlib.pyplot as plt
import matplotlib.animation as animation

npdata = numpy.random.randint(100, size=(5,6,10))
plotlays, plotcols = [2,5], ["black","red"]

fig = plt.figure()
ax = plt.axes(xlim=(0, numpy.shape(npdata)[0]), ylim=(0, numpy.max(npdata)))
timetext = ax.text(0.5,50,'')

lines = []
for index,lay in enumerate(plotlays):
    lobj = ax.plot([],[],lw=2,color=plotcols[index])[0]
    lines.append(lobj)

def init():
    for line in lines:
        line.set_data([],[])
    return lines

def animate(i):
    timetext.set_text(i)
    x = numpy.array(range(1,npdata.shape[0]+1))
    for lnum,line in enumerate(lines):
        line.set_data(x,npdata[:,plotlays[lnum]-1,i])
    return lines, timetext

anim = animation.FuncAnimation(fig, animate, init_func=init,
                               frames=numpy.shape(npdata)[1], interval=100, blit=True)

plt.show()

Can you please post the full traceback? – aIKid Dec 17 '13 at 01:51 — aIKid, Dec 17 '13 at 01:51

tacaswell · Accepted Answer · 2013-12-17T06:32:46.727

9

def animate(i):
    timetext.set_text(i)
    x = numpy.array(range(1,npdata.shape[0]+1))
    for lnum,line in enumerate(lines):
        line.set_data(x,npdata[:,plotlays[lnum]-1,i])
    return lines, timetext # <- returns a tuple of form (list, artist)

change this to

     return tuple(lines) + (timetext,)

or something similar so that you return an iterable of artists from animate.

edited Dec 17 '13 at 06:32

answered Dec 17 '13 at 05:11

tacaswell

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legend! Thanks tcaswell. – user3109337 Dec 17 '13 at 22:06
If you have time, can you explain why you must package these objects into a tuple to return them? And also what is the difference between (for my example) timetext and timetext, ? – user3109337 Dec 17 '13 at 22:16
You need to return an iterable of artists, it can be a list or a tuple. I used a tuple instead of a list for no particular reason. `([line1, line2], text)` vs `(line1, line2, text)` – tacaswell Dec 18 '13 at 00:54

Matplotlib animating multiple lines and text

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