I am discovering something that is, quite frankly absurd, about MATLAB. It is not possible in a session of MATLAB to open two files or even reference by link two files with the same name, even if in different folders (as would re required by any file system.) In fact it isn't possible to have two identically named files accessible on the MATLAB path without leading to ambiguity when addressing files.
In my quite large solution I have resolved to giving the full name of the file, inclusive of its location in the model, to allow unique file names and not violate this limitation. Up to now this has resolved the issue in a somewhat ugly way. However I have just now discovered a second issue that compounds the first, that being file names are limited to 63 characters. Now I cannot have a name that fits either criteria and be sensible.
It seems the only answer is to choose semi-random file names that fit together into a global menagerie of file names and hope to capture just enough information to be able to identify a file and its purpose.
How else is one to manage large systems?
(Apologies for the tone, I am getting to the end of my tether with Mathworks software.)