Launching ClustalX2 and a file in it from java

Asked Feb 26 '14 at 05:18

Active Feb 26 '14 at 06:50

Viewed 64 times

I have successfully launch clustalx from java(using only /home/b/Desktop/clustalx-2.1-linux-i686-libcppstatic/clustalx) but cannot launch a file in it directly. Here are the code what i have tried:

 String[] command= {"/home/b/Desktop/clustalx-2.1-linux-i686-libcppstatic/clustalx", "/home/b/Desktop/clustalx-2.1-linux-i686-libcppstatic/"+ "infile=F1F2CXAT211-alignment.aln" +".input"};
 String outlist[] = runCommand(command);

It is Running successfully without displaying clustalx.

edited Feb 26 '14 at 06:50

Charles

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asked Feb 26 '14 at 05:18

BDM

have you try "nohup"? – TA Nguyen Feb 26 '14 at 05:26
I have tried "nohup" and still the program remains the same. Try to help out with a sample code please – BDM Feb 27 '14 at 07:55

Launching ClustalX2 and a file in it from java

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