I'm trying to update the python installation on an Apple machine running Mavericks. I fear I've mangled things with homebrew.
I get the following output when I try to tab-complete python:
python python2.5-config python2.7 python3-config pythonw pythonw2.7 python-config python2.6 python2.7-config python3.3 pythonw2.5 pythonw3.3 python2.5 python2.6-config python3 python3.3-config pythonw2.6
Running where python results in the following output /usr/bin/python. Similarly, running where python3 results in /usr/local/bin/python3 and where python3.3 results in /usr/local/bin/python3.3.
I get the following output when I run each of the different python executables, respectively:
$ python Python 2.7.5 (default, Aug 25 2013, 00:04:04) [GCC 4.2.1 Compatible Apple LLVM 5.0 (clang-500.0.68)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>>
$ python3 Python 3.3.5 (default, Mar 17 2014, 21:17:03) [GCC 4.2.1 Compatible Apple LLVM 5.1 (clang-503.0.38)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>>
$ python3.3 Python 3.3.5 (default, Mar 17 2014, 21:17:03) [GCC 4.2.1 Compatible Apple LLVM 5.1 (clang-503.0.38)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>>
In PyCharm, the default available interpreter paths are:
/System/Library/Frameworks/Python.framework/Versions/2.5/bin/python/System/Library/Frameworks/Python.framework/Versions/2.6/bin/python/System/Library/Frameworks/Python.framework/Versions/2.7/bin/python/usr/local/bin/pypy/usr/local/bin/python3/usr/local/bin/python3.3
Selecting /System/Library/Frameworks/Python.framework/Versions/2.7/bin/python as my interpreter in PyCharm shows me that several of the packages are out of date. These out of date packages are the same that are shown when I run pip list -o:
Warning: cannot find svn location for setuptools==0.6c12dev-r88846 bdist-mpkg (Current: 0.4.4 Latest: 0.5.0) Could not find any downloads that satisfy the requirement bonjour-py Some externally hosted files were ignored (use --allow-external bonjour-py to allow). matplotlib (Current: 1.1.1 Latest: 1.3.1) numpy (Current: 1.6.2 Latest: 1.8.0) pyOpenSSL (Current: 0.13 Latest: 0.14) python-dateutil (Current: 1.5 Latest: 2.2) pytz (Current: 2012d Latest: 2014.1) scipy (Current: 0.11.0 Latest: 0.13.3) setuptools (Current: 0.6c12dev-r88846 Latest: 3.3) Twisted (Current: 12.2.0 Latest: 13.2.0) xattr (Current: 0.6.4 Latest: 0.7.4) zope.interface (Current: 3.8.0 Latest: 4.1.0) pyobjc-core (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-AddressBook (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-AppleScriptKit (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-AppleScriptObjC (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-Automator (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-CFNetwork (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-Cocoa (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-Collaboration (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-CoreData (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-CoreLocation (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-CoreText (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-DictionaryServices (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-ExceptionHandling (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-FSEvents (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-InputMethodKit (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-InstallerPlugins (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-InstantMessage (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-InterfaceBuilderKit (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-LatentSemanticMapping (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-LaunchServices (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-Message (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-OpenDirectory (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-PreferencePanes (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-PubSub (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-QTKit (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-Quartz (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-ScreenSaver (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-ScriptingBridge (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-SearchKit (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-ServiceManagement (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-SyncServices (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-SystemConfiguration (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-WebKit (Current: 2.3.2a0 Latest: 2.5.1) pyobjc-framework-XgridFoundation (Current: 2.3.2a0 Latest: 2.5.1)
Trying to update numpy through PyCharm results in the following error:
Upgrade packages failed. The following command was executed: /Applications/PyCharm CE.app/helpers/packaging_tool.py install --build-dir /private/var/folders/7r/9rtxb7c94bv_k4szp8lnkpmm0000gn/T/pycharm-packaging258144586042338380.tmp -U numpy The error output of the command: Storing debug log for failure in /Users/myusername/Library/Logs/pip.log (1)
Examining the log file it seems that this is what caused the failure
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future] clang: note: this will be a hard error (cannot be downgraded to a warning) in the future clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future] clang: note: this will be a hard error (cannot be downgraded to a warning) in the future failure.
I get the same error as above when I run sudo pip install -U numpy
Based on this information I (hopefully correctly) concluded that I'm trying to update the Apple provided python and that MacPorts might be better suited to solving this task. I installed MacPorts and ran port upgrade outdated which resulted in Nothing to upgrade.
How can I update from 2.7.5 to 2.7.6 and update the associated packages?
