I tried to install the package raster which gave me non-zero exit status because classInt is not installed.
I recently updated and upgraded all R packages and R-core (to 3.1) on Ubuntu.
Now if I try to install the package classInt from the CRAN repositories or even when doing it manually (download the tar.gz and setting the repos) I get the following error code:
package ‘classInt’ is not available (for R version 3.1.0)
Any idea on how to debug this?
The whole error outputs to complete the post:
> install.packages("raster")
Installing package into ‘/home/user/R/x86_64-pc-linux-gnu-library/3.1’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/src/contrib/raster_2.2-31.tar.gz'
Content type 'application/x-gzip' length 1049759 bytes (1.0 Mb)
opened URL
==================================================
downloaded 1.0 Mb
Error in library("classInt") : there is no package called ‘classInt’
Execution halted
Warning in install.packages :
installation of package ‘raster’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpaJUU7d/downloaded_packages’
>
> install.packages("classInt")
Installing package into ‘/home/user/R/x86_64-pc-linux-gnu-library/3.1’
(as ‘lib’ is unspecified)
also installing the dependency ‘e1071’
trying URL 'http://cran.rstudio.com/src/contrib/e1071_1.6-3.tar.gz'
Content type 'application/x-gzip' length 583697 bytes (570 Kb)
opened URL
==================================================
downloaded 570 Kb
trying URL 'http://cran.rstudio.com/src/contrib/classInt_0.1-21.tar.gz'
Content type 'application/x-gzip' length 18213 bytes (17 Kb)
opened URL
==================================================
downloaded 17 Kb
Error in library("classInt") : there is no package called ‘classInt’
Execution halted
Warning in install.packages :
installation of package ‘e1071’ had non-zero exit status
Error in library("classInt") : there is no package called ‘classInt’
Execution halted
Warning in install.packages :
installation of package ‘classInt’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpaJUU7d/downloaded_packages’
>
> install.packages("~/R/Packages/classInt_0.1-21.tar.gz",repos=NULL, type="source")
Installing package into ‘/home/user/R/x86_64-pc-linux-gnu-library/3.1’
(as ‘lib’ is unspecified)
Error in library("classInt") : there is no package called ‘classInt’
Execution halted
Warning in install.packages :
installation of package ‘/home/user/R/Packages/classInt_0.1-21.tar.gz’ had non-zero exit status
>
here the session info:
> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_3.1.0
and options()
> options()
$add.smooth
[1] TRUE
$bitmapType
[1] "cairo"
$browser
function (url)
{
.Call("rs_browseURL", url)
}
<environment: 0x45ec5b0>
$browserNLdisabled
[1] FALSE
$CBoundsCheck
[1] FALSE
$check.bounds
[1] FALSE
$citation.bibtex.max
[1] 1
$continue
[1] "+ "
$contrasts
unordered ordered
"contr.treatment" "contr.poly"
$defaultPackages
[1] "datasets" "utils" "grDevices" "graphics" "stats" "methods"
$demo.ask
[1] "default"
$deparse.cutoff
[1] 60
$device
[1] "RStudioGD"
$device.ask.default
[1] FALSE
$digits
[1] 7
$dvipscmd
[1] "dvips"
$echo
[1] TRUE
$editor
[1] "vi"
$encoding
[1] "native.enc"
$error
(function ()
{
.rs.recordTraceback(userOnly)
})()
$example.ask
[1] "default"
$expressions
[1] 5000
$ggvis.renderer
[1] "svg"
$help.search.types
[1] "vignette" "demo" "help"
$help.try.all.packages
[1] FALSE
$help_type
[1] "html"
$HTTPUserAgent
[1] "R (3.1.0 x86_64-pc-linux-gnu x86_64 linux-gnu)"
$internet.info
[1] 2
$keep.source
[1] TRUE
$keep.source.pkgs
[1] FALSE
$locatorBell
[1] TRUE
$mailer
[1] "mailto"
$max.print
[1] 10000
$menu.graphics
[1] FALSE
$na.action
[1] "na.omit"
$nwarnings
[1] 50
$OutDec
[1] "."
$pager
function (files, header, title, delete.file)
{
for (i in 1:length(files)) {
if ((i > length(header)) || !nzchar(header[[i]]))
fileTitle <- title
else fileTitle <- header[[i]]
.Call("rs_showFile", fileTitle, files[[i]], delete.file)
}
}
<environment: 0x44790f8>
$papersize
[1] "a4"
$pdfviewer
[1] "/usr/bin/xdg-open"
$pkgType
[1] "source"
$printcmd
[1] "/usr/bin/lpr"
$prompt
[1] "> "
$repos
CRAN
"http://cran.univ-paris1.fr/"
$rl_word_breaks
[1] " \t\n\"\\'`><=%;,|&{()}"
$scipen
[1] 0
$show.coef.Pvalues
[1] TRUE
$show.error.messages
[1] TRUE
$show.signif.stars
[1] TRUE
$str
$str$strict.width
[1] "no"
$str$digits.d
[1] 3
$str$vec.len
[1] 4
$str.dendrogram.last
[1] "`"
$stringsAsFactors
[1] TRUE
$texi2dvi
[1] "/usr/bin/texi2dvi"
$timeout
[1] 60
$ts.eps
[1] 1e-05
$ts.S.compat
[1] FALSE
$unzip
[1] "/usr/bin/unzip"
$useFancyQuotes
[1] TRUE
$verbose
[1] FALSE
$viewer
function (url, height = NULL)
{
if (!is.character(url) || (length(url) != 1))
stop("url must be a single element character vector.",
call. = FALSE)
if (!is.null(height) && (!is.numeric(height) || (length(height) !=
1)))
stop("height must be a single element integer vector.",
call. = FALSE)
invisible(.Call("rs_viewer", url, height))
}
<environment: 0x45ec5b0>
$warn
[1] 0
$warning.length
[1] 1000
$width
[1] 122
