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I'm trying to install the bioservices : 1.2.5 on my Windows 7 with Python 3.4 installed. The path has the scripts included but I still continue to have the syntax error when trying to use 'pip install'.

I tried to install 'bioservices' using: 

sudo pip install bioservices
sudo easy_install bioservices
pip install bioservices

Till now nothing worked.

Edit:* Now gives me another error:

After running pip install bioservices, on Windows powershell this error appears

Command python setup.py egg_info failed with error code 1 in C:\User\Raquel\AppData\Local\Temp\pip_build_Raquel\SOAPpy

Storing debug log for failure in C:\User\Raquel\pip\pip.log

Cleb
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user3602771
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  • Can you post the error messages you are getting as well as how you are doing it? – drum May 05 '14 at 02:28
  • I do this in the windows powershell with admin rights. python pip install bioservices and the error message is: File "", line 1 pip install bioservices ^ SyntaxError: invalid syntax​ – user3602771 May 05 '14 at 14:54
  • Another method to installing is to copy the bioservices folder into your `c:/python/Lib` directory. Then run `python setup.py install`. – drum May 05 '14 at 17:58
  • @drum thanks that worked, but now using the extention gives me the following error – user3602771 May 09 '14 at 23:14
  • BioServices v$Id: __init__.py 320 2014-02-28 13:31:27Z cokelaer $$, $Rev: 320 $ warning: pandas is not installed on your system Some features requires this library and future version of BioServices may use it. Traceback (most recent call last): File "C:\Users\Raquel\Documents\Universidade\Python\workspace\Array\array.py", line 6, in from bioservices import arrayexpress File "C:\Python34\lib\site-packages\bioservices-1.2.6-py3.4.egg\bioservices\__init__.py", line 21, in ImportError: No module named 'services' – user3602771 May 09 '14 at 23:19

1 Answers1

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BioServices depends on SOAPpy for the WSDL services. Unfortunately, it looks like SOAPpy is not available for Python 3 (see e.g., What SOAP libraries exist for Python 3.x? ).

This may be the reason why the installation fails with

Command python setup.py egg_info failed with error code 1 in C:\User\Raquel\AppData\Loca\Temp\pip_build_Raquel\SOAPpy
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Thomas Cokelaer
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