I end up moving my git repo to another directory and also the change directory of all my files.
Now when I add file to index and commit it, it acts as if it is committing a new file and not committing the difference. Eventhough when I pull up the history in Git Extension, all the history is there, and the most recent commit is still appending to the master as if nothing ever happen.
Probably I don't know enough how git to works that it is how it's suppose to work? Suggestions? or anyone need me to clarify?