The point (there are actually 17) of the articles is to point out that the F/J Framework is more of a research project than a general-purpose commercial application development framework.
Criticize the object, not the man. Trying to do that is most difficult when the main problem with the framework is that the architect is a professor/scientist not an engineer/commercial developer. The PDF consolidation downloadable from the article goes more into the problem of using research standards rather than engineering standards.
Parallel streams work fine, until you try to scale them. The framework uses pull technology; the request goes into a submission queue, the thread must pull the request out of the submission queue. The Task goes back into the forking thread's deque, other threads must pull the Task out of the deque. This technique doesn't scale well. In a push technology, each Task is scattered to every thread in the system. That works much better in large scale environments.
There are many other problems with scaling as even Paul Sandoz from Oracle pointed out: For instance if you have 32 cores and are doing Stream.of(s1, s2, s3, s4).flatMap(x -> x).reduce(...) then at most you will only use 4 cores. The article points out, with downloadable software, that scaling does not work well and the parquential technique is necessary to avoid stack overflows and OOME.
Use the parallel streams. But beware of the limitations.