installation of package ‘devtools’ had non-zero exit status on Ubuntu

Question

I'm trying to install devtools in a PowerPC with a R version 3.1.1 but failed at the end because the curl library:

...
** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) :    unable to load shared object '/path
to/R/powerpc-unknown-linux-gnu-library/3.1/curl/libs/curl.so':   /path
to/R/powerpc-unknown-linux-gnu-library/3.1/curl/libs/curl.so:
undefined symbol: BSWAP_32 Error: loading failed Execution halted
ERROR: loading failed
 * removing ‘/path to/R/powerpc-unknown-linux-gnu-library/3.1/curl’ ERROR: dependency ‘curl’ is not available for package ‘httr’
 * removing ‘/path to/R/powerpc-unknown-linux-gnu-library/3.1/httr’ ERROR: dependency ‘curl’ is not available for package ‘rversions’
 * removing ‘/path to/R/powerpc-unknown-linux-gnu-library/3.1/rversions’ ERROR:
dependencies ‘httr’, ‘rversions’ are not available for package
‘devtools’
* removing ‘/path to/R/powerpc-unknown-linux-gnu-library/3.1/devtools’

The downloaded source packages are in
 ‘/tmp/RtmpD0yE63/downloaded_packages’ Warning messages: 1: In
install.packages("devtools") :   installation of package ‘curl’ had
non-zero exit status 2: In install.packages("devtools") :  
installation of package ‘httr’ had non-zero exit status 3: In
install.packages("devtools") :   installation of package ‘rversions’
had non-zero exit status 4: In install.packages("devtools") :  
installation of package ‘devtools’ had non-zero exit status

I've already installed libcurl4-gnutls-dev and libcurl4-openssl-dev and the libcurl version is 7.38.0.

Does anyone know a fix to this? Thanks ;)

I've tried to install libcurl4 (it's the only one i've left) and then, intall the curl package but I'm still getting the same :( Thanks for replay ;) — Aida Palacio Hoz, Jun 30 '15 at 07:21
The problem persists and i need to install devtools because its important to install some packages from github. Anyone? — Aida Palacio Hoz, Jul 09 '15 at 08:26
I had same problem. your problem corresponding to R version. you should upgrade it to R-3.1.2 (wget http://cran.r-project.org/src/base/R-3/R-3.1.2.tar.gz) — Parisa Taherian, Jul 22 '15 at 05:13
For uninstall the old version use from this commands in ubuntu ( `code` sudo apt-get --purge remove r-base sudo apt-get --purge remove r-base-dev sudo apt-get --purge remove r-base-core `code`) — Parisa Taherian, Jul 22 '15 at 05:30
This was still an issue for me in v3.2.4 on Ubuntu 14. @Parisa Taherian's solution below resolved it for me. — killthrush, Mar 31 '16 at 12:45

score 48 · Answer 1 · answered Sep 02 '16 at 18:31

The same problem happened to me when I was trying to install "devtools" package on a new machine with Ubuntu 16.04 system.

I tried many answers including the adopted one above, but I still couldn't solve the problem until I noticed another warning information "(as ‘lib’ is unspecified)". Then I realized that I was running R as a normal user while the R base is installed by root. It means the package "devtools" couldn't be installed into the default R library folder and possibly couldn't use some dependent packages. Then the solution became very easy: run R as root user and then install "devtools".

Following the instructions of Dean Attali (https://www.digitalocean.com/community/tutorials/how-to-set-up-r-on-ubuntu-14-04), I summarize the steps below. Just run them in a terminal.

$ sudo apt-get -y install libcurl4-gnutls-dev libxml2-dev libssl-dev
$ sudo su  
$ R
> install.packages('devtools', repos='http://cran.rstudio.com/')

That's it. Since the package is installed by root, it can be used by all users of the system.

This answer helped me succeed installing devtools on Rstudio 1.1.453. — Veliko, Jul 07 '18 at 20:42

Parisa Taherian · Answer 2 · 2015-07-22T05:12:45.670

7

For Curl use:

apt-get -y build-dep libcurl4-gnutls-dev
apt-get -y install libcurl4-gnutls-dev

And you should update the R version to R-3.1.2

wget http://cran.r-project.org/src/base/R-3/R-3.1.2.tar.gz

edited Jul 22 '15 at 05:12

answered Jun 30 '15 at 12:41

Parisa Taherian

501
5
10

i have this lib installed, so im still getting the problem. Thanks for the replay. – Aida Palacio Hoz Jul 02 '15 at 07:38

score 1 · Answer 3 · answered Sep 19 '18 at 06:39

I m using Ubuntu 16.04 and this is how I solved this issue:

aptitude install libssl-dev

then aptitude packg manage will allow you to choose the right version which is required for installation of devtools. Repeat the same for

aptitude libcurl4-gnutls-dev
aptitude libxml2-dev

Finally, install this libgit2 lib

devtools::install_github('ropensci/git2r')
devtools::load_all()
R CMD INSTALL git2r

I could not solve it with apt-get packg manager. Thats all :) !

score 0 · Answer 4 · edited May 23 '17 at 12:17

0

This error was happening when I was using 3.0.2. I updated the R, now It is fine. I also spent the one day to find the solution. I tried the all the solution. But, no effect. I updated the R using this solution. Now, devtools package is working.

edited May 23 '17 at 12:17

Community

1
1

answered Oct 07 '15 at 18:51

Hafiz Shehbaz Ali

2,566
25
21

I'm using R 3.1.1 and it's the last version in my operating system powerpc64. I've tried that and i'm still getting problems but thank you ;) – Aida Palacio Hoz Oct 09 '15 at 06:37
add the above line in this file /etc/source.list . then sudo apt-get update. Then, use the solution. May it work. – Hafiz Shehbaz Ali Oct 11 '15 at 04:22

score 0 · Answer 5 · answered Oct 26 '22 at 11:27

0

Fedora 34

What did it for me was:

sudo dnf groupinstall "Development tools"

Not sure about that, but also:

sudo dnf install freetype-devel libpng-devel libtiff-devel libjpeg-turbo-devel

Don't know, don't care, but it worked!

answered Oct 26 '22 at 11:27

Vérace

854
10
41

installation of package ‘devtools’ had non-zero exit status on Ubuntu

5 Answers5

Fedora 34

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