I would recommend a OGM framework like Tinkerpop, or if you need something a bit higher level and more similar to Hibernate then consider Ferma. Ferma sits on top of Tinkerpop and uses annotations to define Java classes that resemble an Entity in JPA and Hibernate. The difference is Ferma and Tinkerpop is built specifically for graph databases rather than trying to stuff it into a framework designed for traditional Relational Databases.
One nice feature of Ferma and Tinkerpop is that while built for Graph Databases they still work on Relational Databases. There are several drivers for Tinkerpop that allow it to work on virtually every major Graph Database and Relational Database on the market. It can also use in-memory drivers that exist natively in Tinkerpop and therefore doesn't need to be backed by any database at all. Its an extremely flexible platform that has a lot of benefits when it comes to modular and flexible code.
For reference here is the description of the Ferma project.
The Ferma project was originally created as an alternative to the
TinkerPop2 Frames project. Which at the time lacked features needed by
the community, and its performance was cripplingly slow. Today Ferma
is a robust framework that takes on a role similar to an
Object-relational Model (ORM) library for traditional databases. Ferma
is often referred to as a Object-graph Model (OGM) library, and maps
Java objects to elements in a graph such as a Vertex or an Edge. In
short it allows a schema to be defined using java interfaces and
classes which provides a level of abstraction for interacting with the
underlying graph.
And also the description of the Tinkerpop project.
Apache TinkerPop™ is a graph computing framework for both graph
databases (OLTP) and graph analytic systems (OLAP).
Note: I am one of the author's of Ferma.