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I have been trying to link my numpy installation to various Linear Algebra and Optimization libraries that exists in the system. It currently does not have any _doatlas.so file in /numpy/core because of which numpy.disutils does not exist.

How can I link my existing atlas, blas and lapack .so files to existing numpy installation?

However I have my scipy correctly linked to above files. 

    In [5]: scipy.__config__.show()
atlas_threads_info:
    libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']
    define_macros = [('ATLAS_INFO', '"\\"None\\""')]
    language = f77
    include_dirs = ['/usr/include/atlas']
blas_opt_info:
    libraries = ['ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base']
    define_macros = [('ATLAS_INFO', '"\\"None\\""')]
    language = c
    include_dirs = ['/usr/include/atlas']
atlas_blas_threads_info:
    libraries = ['ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base']
    define_macros = [('ATLAS_INFO', '"\\"None\\""')]
    language = c
    include_dirs = ['/usr/include/atlas']
lapack_opt_info:
    libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']
    define_macros = [('ATLAS_INFO', '"\\"None\\""')]
    language = f77
    include_dirs = ['/usr/include/atlas']
lapack_mkl_info:
  NOT AVAILABLE
blas_mkl_info:
  NOT AVAILABLE
mkl_info:
  NOT AVAILABLE

Any suggestion?

pg2455
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  • Compiling Numpy with OpenBLAS integration : http://stackoverflow.com/questions/11443302/compiling-numpy-with-openblas-integration/14391693#14391693 – pg2455 Jan 29 '16 at 17:37
  • Link installed Numpy to the libraries: http://stackoverflow.com/questions/21671040/link-atlas-mkl-to-an-installed-numpy – pg2455 Jan 29 '16 at 17:38

0 Answers0