Consider using a multi-step process as follows by running three commands:
1. create temp assembly from 3 input assemblies.
2. delete original libraryA.dll assembly.
3. rename temp assembly to libraryA.dll.
Example:
3 commands executed on a single line by using "&" separator.
C:\<somepath>\Debug>"C:\<somepath>"\ILMerge.exe /out:temp.dll libraryA.dll libraryB.dll libraryC.dll /targetplatform:v4 & del /F /Q libraryA.dll & ren temp.dll libraryA.dll
Output (viewed in ILSpy for convenience):

IMPORTANT: You should consider following this process only with Release builds.
If done against debug builds with .pdb files the rename performed in the 3rd step of the example will void the ability to debug the assemblies. related info on SO: here
NOTE: If your intention is to maintain the assembly version of the original libraryA.dll assembly in the process you'll need to get more
creative i.e. source the assembly version and subsequently passing the version to the /ver:version argument of ILMerge.exe.
If considering running ILMerge as a postbuild event the following links related to getting the version are applicable.
SO: getting version in postbuild event
SO: getting version in commandline
Invoking ILMerge as a postbuild is discussed SO: here
Also note: A question similar to yours was discussed here without an example based answer.