Update: According to Adobe, adding Update 1 will address this issue
Fixed Bug ID: 4126398 Description: SQL comments inside CFQuery are not ignored.
ColdFusion 2016 strips newlines and executes queries on a single line. Breaking all queries with SQL style comments. This behavior is not found in CF10 or CF11.
<cfquery name="test" datasource="MSSQL_master">
select
UserID, --primary key field
FirstName
from Users
</cfquery>
yields:
Error Executing Database Query.
[Macromedia][SQLServer JDBC Driver][SQLServer]Incorrect syntax near ','.
If anyone is aware of some sort of configuration setting or change to fix this I'd love to hear about it.