I don't completely understand the case of the original poster but I can proof that it's possible to copy directory structure using COPY in Dockerfile.
Suppose you have this folder structure:
folder1
file1.html
file2.html
folder2
file3.html
file4.html
subfolder
file5.html
file6.html
To copy it to the destination image you can use such a Dockerfile content:
FROM nginx
COPY ./folder1/ /usr/share/nginx/html/folder1/
COPY ./folder2/ /usr/share/nginx/html/folder2/
RUN ls -laR /usr/share/nginx/html/*
The output of docker build .
as follows:
$ docker build --no-cache .
Sending build context to Docker daemon 9.728kB
Step 1/4 : FROM nginx
---> 7042885a156a
Step 2/4 : COPY ./folder1/ /usr/share/nginx/html/folder1/
---> 6388fd58798b
Step 3/4 : COPY ./folder2/ /usr/share/nginx/html/folder2/
---> fb6c6eacf41e
Step 4/4 : RUN ls -laR /usr/share/nginx/html/*
---> Running in face3cbc0031
-rw-r--r-- 1 root root 494 Dec 25 09:56 /usr/share/nginx/html/50x.html
-rw-r--r-- 1 root root 612 Dec 25 09:56 /usr/share/nginx/html/index.html
/usr/share/nginx/html/folder1:
total 16
drwxr-xr-x 2 root root 4096 Jan 16 10:43 .
drwxr-xr-x 1 root root 4096 Jan 16 10:43 ..
-rwxr-xr-x 1 root root 7 Jan 16 10:32 file1.html
-rwxr-xr-x 1 root root 7 Jan 16 10:32 file2.html
/usr/share/nginx/html/folder2:
total 20
drwxr-xr-x 3 root root 4096 Jan 16 10:43 .
drwxr-xr-x 1 root root 4096 Jan 16 10:43 ..
-rwxr-xr-x 1 root root 7 Jan 16 10:32 file3.html
-rwxr-xr-x 1 root root 7 Jan 16 10:32 file4.html
drwxr-xr-x 2 root root 4096 Jan 16 10:33 subfolder
/usr/share/nginx/html/folder2/subfolder:
total 16
drwxr-xr-x 2 root root 4096 Jan 16 10:33 .
drwxr-xr-x 3 root root 4096 Jan 16 10:43 ..
-rwxr-xr-x 1 root root 7 Jan 16 10:32 file5.html
-rwxr-xr-x 1 root root 7 Jan 16 10:32 file6.html
Removing intermediate container face3cbc0031
---> 0e0062afab76
Successfully built 0e0062afab76