I am using illuminaio::readIDAT to read some idat files.
library(illuminaio)
dat <- readIDAT('1552034262_A_Grn.idat')
Error in nchar(b64String) : invalid multibyte string, element 1
In addition: Warning messages:
1: In grep(" __", r) : input string 47890 is invalid in this locale
2: In grep(" __", r) : input string 47891 is invalid in this locale
3: In grep(" __", r) : input string 47892 is invalid in this locale
4: In grep(" __", r) : input string 47893 is invalid in this locale
5: In grep(" __", r) : input string 47894 is invalid in this locale
6: In grep(">", r) : input string 47890 is invalid in this locale
7: In grep(">", r) : input string 47891 is invalid in this locale
8: In grep(">", r) : input string 47892 is invalid in this locale
9: In grep(">", r) : input string 47893 is invalid in this locale
10: In grep(">", r) : input string 47894 is invalid in this locale
This is my sessionInfo():
R version 3.3.1 (2016-06-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS release 6.7 (Final)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] illuminaio_0.15.1
loaded via a namespace (and not attached):
[1] base64_2.0 openssl_0.9.4
I am getting this error but don't know how to debug it. Any help would be much appreciated.
