To do this on the command line, make sure you provide both an input and output symbol table. The command should be something like
fstdraw --isymbols=input_syms.txt --osymbols=output_syms.txt fst.bin
I haven't used "PyFST", but I would suggest you use the Python bindings that are included in OpenFst 1.5.1 and later. The Python support has been getting better in versions 1.5.x, so it's best to use 1.5.3 or later.
If using the OpenFST provided Python bindings, make sure you set the symbol tables before attempting to draw.
fst.input_symbols = your_symbol_table
fst.output_symbols = your_symbol_table
fst.draw("fst.dot")
There is more documentation for these Python bindings available here: http://www.openfst.org/twiki/bin/view/FST/PythonExtension
If that doesn't help, could you post some example code please?