Suppose you have an array of integers (for eg. [1 5 3 4 6]). The elements are rearranged according to the following rule. Every element can hop forward (towards left) and slide the elements in those indices over which it hopped. The process starts with element in second index (i.e. 5). It has a choice to hop over element 1 or it can stay in its own position.If it does choose to hop, element 1 slides down to index 2. Let us assume it does choose to hop and our resultant array will then be [5 1 3 4 6]. Element 3 can now hop over 1 or 2 positions and the process repeats. If 3 hops over one position the array will now be [5 3 1 4 6] and if it hops over two positions it will now be [3 5 1 4 6].
It is very easy to show that all possible permutation of the elements is possible in this way. Also any final configuration can be reached by an unique set of occurrences.
The question is, given a final array and a source array, find the total number of hops required to arrive at the final array from the source. A O(N^2) implementation is easy to find, however I believe this can be done in O(N) or O(NlogN). Also if it is not possible to do better than O(N2) it will be great to know.
For example if the final array is [3,5,1,4,6] and the source array [1,5,3,4,6], the answer will be 3.
My O(N2) algorithm is like this: you loop over all the positions of the source array from the end, since we know that is the last element to move. Here it will be 6 and we check its position in the final array. We calculate the number of hops necessary and need to rearrange the final array to put that element in its original position in the source array. The rearranging step goes over all the elements in the array and the process loops over all the elements, hence O(N^2). Using Hashmap or map can help in searching, but the map needs to be updated after every step which makes in O(N^2).
P.S. I am trying to model correlation between two permutations in a Bayesian way and this is a sub-problem of that. Any ideas on modifying the generative process to make the problem simpler is also helpful.
Edit: I have found my answer. This is exactly what Kendall Tau distance does. There is an easy merge sort based algorithm to find this out in O(NlogN).