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Is any solution to fix the trouble? I am interested in to install the bipartite package from github.library(devtools) install_github ("carsten/bipartite") or install_github("biometry/bipartite") or even r bipartite?

abdul
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  • Interested in Bipartite 2.08 – abdul Feb 11 '17 at 06:26
  • Which error do you get? – lizzie Feb 11 '17 at 06:27
  • Why don't you install from CRAN? `install.packages("bipartite")` – lizzie Feb 11 '17 at 06:30
  • @lizzie This is the error I get Downloading GitHub repo carsten/bipartite@master from URL https://api.github.com/repos/carsten/bipartite/zipball/master Error in stop(github_error(request)) : Not Found (404) – abdul Feb 11 '17 at 07:26
  • Bipartite 2.08 is not available in CRAN. – abdul Feb 11 '17 at 07:28
  • sessionInfo() R version 3.3.0 (2016-05-03) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 – abdul Feb 11 '17 at 07:39
  • Installing bipartite been a problem for many ecologists I work with. One thing we've found helpful is when dependencies don't load, installing those packages again, and if applicable, selecting `no` when we get this question `Do you want to install from sources the package which needs compilation? (Yes/no/cancel) ` – Michael Roswell Mar 06 '19 at 21:43

2 Answers2

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1) Go to: https://github.com/biometry/bipartite

2) Download the version you want. In this case you want the 2.08. So download the file bipartite_2.08.tar.gz.

3) Go to R and use the command 

install.packages(path_to_file, repos = NULL, type="source")

The path_to_file is where the downloaded package is. For example, in my case, is in the Downloads folder. So, I would do:

 install.packages("~/Downloads/bipartite_2.08.tar.gz", repos = NULL, type="source")
lizzie
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  • Thank you very much for your help. – abdul Feb 12 '17 at 00:51
  • installing *source* package 'bipartite' ... ** libs Warning: running command 'make -f "C:/PROGRA~1/R/R-33~1.0/etc/x64/Makeconf" -f "C:/PROGRA~1/R/R-33~1.0/share/make/winshlib.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="bipartite.dll" WIN=64 TCLBIN=64 OBJECTS="bmn5.o identifyModules.o"' had status 127 ERROR: compilation failed for package 'bipartite' * removing 'C:/Users/Btc/Documents/R/win-library/3.3/bipartite' * restoring previous 'C:/Users/Btc/Documents/R/win-library/3.3/bipartite' – abdul Feb 12 '17 at 00:54
  • Warning messages: 1: running command '"C:/PROGRA~1/R/R-33~1.0/bin/x64/R" CMD INSTALL -l "C:\Users\Btc\Documents\R\win-library\3.3" "C:/Users/Btc/Downloads/bipartite_2.08.tar.gz"' had status 1 2: In install.packages("C:/Users/Btc/Downloads/bipartite_2.08.tar.gz", : installation of package ‘C:/Users/Btc/Downloads/bipartite_2.08.tar.gz’ had non-zero exit status – abdul Feb 12 '17 at 00:54
  • See here: http://stackoverflow.com/questions/1474081/how-do-i-install-an-r-package-from-source – lizzie Feb 12 '17 at 00:56
  • library(downloader) download("https://github.com/ramnathv/rCharts/archive/master.tar.gz", "rCharts.tar.gz") install.packages("rCharts.tar.gz", repos = NULL, type = "source") – abdul Feb 12 '17 at 07:24
  • Above code works like a magic even with R 3.3.0? I wish to get such solution, as previous operations were unsuccessful for bipartite. – abdul Feb 12 '17 at 07:27
  • Please, any one with solution? – abdul Feb 13 '17 at 07:56
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You have to install those two first. Hope it works smoothly. I'll try the package today

install.packages("fields")
install.packages("sna")
install.packages("~/Downloads/bipartite_2.08.tar.gz", repos = NULL, type="source")
Stephen Rauch
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LDT
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