I messed with environment variables being set for my script on this post where I needed the env variable $DBUS_SESSION_BUS_ADDRESS to be set, but it wouldn't when I called the script as root. You can read through that, but in the end you can check whether %ENV contains your needed variables and if not add them.
From perlvar
%ENV
$ENV{expr}
The hash %ENV contains your current environment. Setting a value in "ENV" changes
the environment for any child processes you subsequently fork() off.
My problem was that I was running the script under sudo and that didn't preserve all my user's env variables, are you running the script under sudo or as some other user, say www-data (apache)?
Simple test:
user@host:~$ perl -e 'print $ENV{q/MY_ENV_VARIABLE/} . "\n"'
and if that doesn't work then you will need to add it to %ENV at the top of your script.