Fortunately, there's a fairly straightforward approach from the JDK: the ProcessBuilder API.
Here is a thorough example of its implementation. If you don't feel like reading through that, this is a terse example:
package com.process;
import java.io.File;
import java.io.IOException;
import java.lang.ProcessBuilder.Redirect;
public class ProcessBuilder {
public static void main(String... args) throws IOException, InterruptedException {
ProcessBuilder builder = new ProcessBuilder("D:/test.bat", "firstArg", "secondArg");
processBuilder.directory(new File("D:/"));
File log = new File("D:/log.txt");
builder.redirectErrorStream(true);
builder.redirectOutput(Redirect.appendTo(log));
Process p = builder.start();
p.waitFor();
}
}