I'm following AWS Elastic Beanstalk's Flask tutorial to deploy my application. Though I get error Your requirements.txt is invalid - in full as below. I dont write the requirement file myself, I generate it via pip freeze command.
The problem seems to happen when I use scipy.optimize module. The scripts runs without any problems on my local server though. Seems like the problem comes from lapack/atlas/cblas that are not imported properly. I have already tried
pip install scipy
pip install lapack
pip install atlas
pip install cblas
brew install scipy
brew install lapack
brew install atlas
brew install cblas
None of that worked! Please help!
NB : I am a mac user.
Here is my ERROR Code :
Your requirements.txt is invalid. Snapshot your logs for details.
ERROR: [Instance: i-03702ea3033581434] Command failed on instance. Return code: 1 Output: (TRUNCATED)...)
File "/usr/lib64/python2.7/subprocess.py", line 541, in check_call
raise CalledProcessError(retcode, cmd)
CalledProcessError: Command '/opt/python/run/venv/bin/pip install -r /opt/python/ondeck/app/requirements.txt' returned non-zero exit status 1.
Hook /opt/elasticbeanstalk/hooks/appdeploy/pre/03deploy.py failed. For more detail, check /var/log/eb-activity.log using console or EB CLI.
INFO: Command execution completed on all instances. Summary: [Successful: 0, Failed: 1].
Here is my eb-activity.log:
libraries lapack_atlas not found in /usr/lib64
libraries f77blas,cblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
/opt/python/run/venv/local/lib64/python2.7/site-packages/numpy/distutils/system_info.py:572: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
lapack_info:
libraries lapack not found in ['/opt/python/run/venv/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib
64', '/usr/lib']
NOT AVAILABLE
/opt/python/run/venv/local/lib64/python2.7/site-packages/numpy/distutils/system_info.py:572: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
self.calc_info()
lapack_src_info:
NOT AVAILABLE
/opt/python/run/venv/local/lib64/python2.7/site-packages/numpy/distutils/system_info.py:572: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
self.calc_info()
NOT AVAILABLE
Running from scipy source directory.
non-existing path in 'scipy/integrate': 'quadpack.h'
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-mfvADv/scipy/setup.py", line 416, in <module>
setup_package()
File "/tmp/pip-build-mfvADv/scipy/setup.py", line 412, in setup_package
setup(**metadata)
File "/opt/python/run/venv/local/lib64/python2.7/site-packages/numpy/distutils/core.py", line 135, in setup
config = configuration()
File "/tmp/pip-build-mfvADv/scipy/setup.py", line 336, in configuration
config.add_subpackage('scipy')
File "/opt/python/run/venv/local/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 1029, in add_subpackage
caller_level = 2)
File "/opt/python/run/venv/local/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 998, in get_subpackage
caller_level = caller_level + 1)
File "/opt/python/run/venv/local/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 935, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 15, in configuration
config.add_subpackage('linalg')
File "/opt/python/run/venv/local/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 1029, in add_subpackage
caller_level = 2)
File "/opt/python/run/venv/local/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 998, in get_subpackage
caller_level = caller_level + 1)
File "/opt/python/run/venv/local/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 935, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/linalg/setup.py", line 20, in configuration
raise NotFoundError('no lapack/blas resources found')
numpy.distutils.system_info.NotFoundError: no lapack/blas resources found
