I have a very similar issue as discussed here: Using Fabric with Multidex with an exported Unity project
Both Fabric and Multidex (for older Android versions) require adding an Application subclass to the AndroidManifest.xml file's application tag. But I can't include both without error, and I don't have access to either of these classes in order to modify them and alter the inheritance hierarchy.
(I need both of these together.)
<application ... android:name="android.support.multidex.MultiDexApplication">
<application ... android:name="io.fabric.unity.android.FabricApplication">
Our build uses Gradle (fairly newly supported in Unity) if that opens any avenues.
How can I get around this issue? I'm open to decompiling and rebuilding jars but so far all my efforts to decompile the fabric-init.jar (which contains the Application subclass) have failed.