This isn't really a problem, I am able to use the Android tools correctly, but they always trip me up when I come back to them because they expect input with longitude first, then latitude (geo fix, and DDMS).
That's backward from the way I have always used them, and from the way every other tool/API I've used has represented them, and even from the way the Android APIs use them (GeoPoint, for example, expects latitude first, then longitude).
I am curious if there is a technical reason for this that I don't understand, or if it's easier in some context or something (some reason for it, or is it just random)?