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I used the following code to install scikit-bio from Spyder 3, but it showed error. Therefore, could anyone please help? many thanks

Code: import pip pip.main (['install', 'scikit-bio'])

Error: Command "C:\Users\vanna\AppData\Local\Continuum\anaconda3\pythonw.exe -u -c "import setuptools, tokenize;file='C:\Users\vanna\AppData\Local\Temp\pip-build-_nvm7kff\scikit-bio\setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record C:\Users\vanna\AppData\Local\Temp\pip-cpfgc63d-record\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in C:\Users\vanna\AppData\Local\Temp\pip-build-_nvm7kff\scikit-bio\

Vanna
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  • I still cannot fix this problem until now, but I would recommend to those who wish to use similar tools in Scikit-bio to another package so-called ecopy since it has similar functions or tools (e.g. PCA, CCA...). – Vanna Mar 26 '18 at 07:56

1 Answers1

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I had a similar error message during pip installation on CPython (Win 10 x64). Upgrading setuptools 

pip install setuptools --upgrade

and installing build tools for most recent Visual Studio resolved the issue. Just like here. Microsoft Visual C++ 14.0 is required (Unable to find vcvarsall.bat)

TimM
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