I am trying to use the R package mRMRe for feature selection within Python as except this feature selection part, all the other modules are in Python.
utils = importr('utils') # -- Only once.
utils.install_packages('mRMRe')
# Now we begin by loading in the R packages
pymrmr = importr('mRMRe')
When the install_packages part is run I get:
In[20]: utils.install_packages('mRMRe')
...:
Out[20]: rpy2.rinterface.NULL
I think the installation is not happening properly because :
In[19]: pymrmr = importr('mRMRe')
...:
Traceback (most recent call last):
File "C:\hduser\AppData\Local\Continuum\anaconda3\lib\site-packages\IPython\core\interactiveshell.py", line 2910, in run_code
exec(code_obj, self.user_global_ns, self.user_ns)
File "<ipython-input-19-e65c804fa4f7>", line 1, in <module>
pymrmr = importr('mRMRe')
File "C:\hduser\AppData\Local\Continuum\anaconda3\lib\site-packages\rpy2\robjects\packages.py", line 453, in importr
env = _get_namespace(rname)
rpy2.rinterface.RRuntimeError: Error in inDL(x, as.logical(local), as.logical(now), ...) :
**unable to load shared object 'C:/Program Files/R/R-3.4.3/library/stats/libs/x64/stats.dll':
LoadLibrary failure: The specified module could not be found.**
I am not sure how to resolve this. Can someone please help me!
Hello, Based on the question above , I could successfully install and use mRMRe functions from within Python. One of the tweaks was to call some functions mRMR.classic in R as mRMR_classic in Python. However, the next step of changing the data format presents a further challenge of memory error for even a small size of 266MB. Please see the below image for illustation:
I am not sure how this is to be resolved. Can someone please help me in this?
