Made my account just to answer your question. Here is a quick and dirty fix:
Insert FigureCanvasAgg.draw(self)
to draw() method to class FigureCanvasInterAgg(FigureCanvasAgg)
in %PycharmInstallDir%\helpers\pycharm_matplotlib_backend\backend_interagg.py
I inserted it to line 92 to the version I used. Though not necessary, I suggest making a backup of backend_interagg.py file before modification.
The file on my system is read only, so to modify it, you may have to copy it to somewhere else, add this line, and copy it back and overwrite with admin rights.
As ImportanceOfBeingErnest said, it IS a PyCharm problem: the helper function author overrode draw() method of the FigureCanvasAgg class without maintaining its intended functionality.