I don't quite understand placement of chunks in an Rstudio notebook. I need to know how to make the chunks and results in the markdown appear in the same order as the original document and be able to control which are included using the include= chunk option.
---
title: "Test markdown"
output:
html_notebook: default
---
```{r, setup, include=FALSE}
# set default chunk options:w
knitr::opts_chunk$set(echo = FALSE, include = FALSE, fig.width = 8, collapse = TRUE, warning = FALSE)
```
Note 0
```{r}
# Comment
c <- 92461110
m <- 7056556
```
```{r, include=TRUE}
c
```
Note 1
```{r}
paste("Nothing")
```
Note 2
```{r,include=TRUE}
paste("Something")
```
```{r, include=TRUE}
paste("something else")
```
I should get
Test Markdown
Note 0
92461110
Note 1
Note 2
[1] "Something"
[1] "Something else"
Instead I get
Test markdown
Note 0
Note 1
Note 2
[1] "Nothing"
[1] "Something"
