After upgrading my mac OS from macOS High Sierra to macOS Mojave (Version 10.14), I am encountering an error in running a script (which I was able to run perfectly properly before upgradation.) Presently, I am running python 2.7.15 with conda as environment manager, and have gcc 5.3.0 installed all within macOS 10.14 Mojave.
This is the software (Cython) that I was running ( https://github.com/sidd0529/COSMOS_Lens)
The package used to run just fine when I was running it before ( using python setup.py build_ext --inplace). But, when I run it now, I encounter the following error:
gcc -fno-strict-aliasing -I/anaconda2/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/anaconda2/lib/python2.7/site-packages/numpy/core/include -I/anaconda2/include/python2.7 -c cosmos_cy.c -o build/temp.macosx-10.6-x86_64-2.7/cosmos_cy.o -O3
In file included from /usr/local/lib/gcc/x86_64-apple-darwin15.0.0/5.3.0/include-fixed/syslimits.h:7:0,
from /usr/local/lib/gcc/x86_64-apple-darwin15.0.0/5.3.0/include-fixed/limits.h:34,
from /anaconda2/include/python2.7/Python.h:19,
from cosmos_cy.c:4:
/usr/local/lib/gcc/x86_64-apple-darwin15.0.0/5.3.0/include-fixed/limits.h:168:61: fatal error: limits.h: No such file or directory
compilation terminated.
error: command 'gcc' failed with exit status 1
I implemented the suggestions given in this link ( xcode-select --install) , but that doesn't work. I uninstalled Anaconda in my computer and reinstalled it again, but that also didn't solve the problem.
I will be really thankful if someone can tell me what I should do to be able run this package properly again.
