I'm trying to get started using some statistical analysis with the limma package that runs out of R. Any one know a good tutorial?
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The limma web-page has plenty of material. I've also written a tutorial paper that analyses yeast microarray data using (amongst other things) limma.

csgillespie
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Cool thanks....so the problem that I'm having now is my data is Agilent not affymetric. Any workarounds for this>? – illbill Apr 05 '11 at 18:13
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2@illbill: I would try asking that question at [biostar](http://biostar.stackexchange.com/) – csgillespie Apr 05 '11 at 23:18