ETA: I don't know if this makes a difference, but a couple days ago, I upgraded/updated my Linux packages. I have had issues in the past where that causes some issues in R/RStudio.
Strange happenings with bookdown. Just a couple days ago, bookdown was building my book beautifully. Now, when I try to build my book, it seems that knitr::include_graphics() is creating an issue, but only if it points to an image URL.
I created a new bookdown project to see if the problem would persist; it did. bookdown built Yihui's minimal example perfectly. Then, I used knitr::include_graphics() to add an image file in the book's directory. Again, in that case, bookdown built the book, and everything worked just right. But, when I changed the image location to a URL, the error message reads:
! LaTeX Error: File `https://upload.wikimedia.org/wikipedia/commons/2/2e/Charle s_Darwin_seated_crop' not found.
Error: Failed to compile testbook.tex. See testbook.log for more info. Execution halted
Exited with status 1.
I am at a loss. The only thing I'm changing is whether the include_graphics() command is using a local file versus one at a URL. Any suggestions are appreciated. Here is my session info:
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Linux Mint 18
Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics utils datasets grDevices
[6] methods base
other attached packages:
[1] ggthemr_1.1.0 mapdata_2.3.0
[3] maps_3.3.0 BRugs_0.9-0
[5] bookdown_0.8.2 blogdown_0.9
[7] rasterImage_0.3.0 plotrix_3.7-4
[9] rasterVis_0.45 latticeExtra_0.6-28
[11] lattice_0.20-38 gridExtra_2.3
[13] rgeos_0.4-2 dismo_1.1-4
[15] RColorBrewer_1.1-2 ggthemes_4.0.1
[17] R2OpenBUGS_3.2-3.2 popbio_2.4.4
[19] demogR_0.6.0 png_0.1-7
[21] jpeg_0.1-8 rnaturalearthhires_0.1.0
[23] rnaturalearthdata_0.1.0 rnaturalearth_0.1.0
[25] raster_2.8-4 rgdal_1.3-6
[27] scales_1.0.0 ggmap_2.7.904
[29] ggvis_0.4.4 rworldmap_1.3-7
[31] maptools_0.9-4 sp_1.3-1
[33] googlesheets_0.3.0 forcats_0.3.0
[35] stringr_1.3.1 dplyr_0.7.8
[37] purrr_0.2.5 readr_1.3.0
[39] tidyr_0.8.2 tibble_1.4.2
[41] ggplot2_3.1.0 tidyverse_1.2.1
loaded via a namespace (and not attached):
[1] nlme_3.1-137 bitops_1.0-6 sf_0.7-1
[4] lubridate_1.7.4 httr_1.4.0 tools_3.4.4
[7] backports_1.1.2 R6_2.3.0 spData_0.2.9.6
[10] DBI_1.0.0 lazyeval_0.2.1 colorspace_1.3-2
[13] withr_2.1.2 tidyselect_0.2.5 compiler_3.4.4
[16] cli_1.0.1 rvest_0.3.2 xml2_1.2.0
[19] hexbin_1.27.2 classInt_0.2-3 digest_0.6.18
[22] foreign_0.8-70 rmarkdown_1.11 pkgconfig_2.0.2
[25] htmltools_0.3.6 rlang_0.3.0.1 readxl_1.1.0
[28] rstudioapi_0.8 shiny_1.2.0 bindr_0.1.1
[31] generics_0.0.2 zoo_1.8-4 jsonlite_1.6
[34] magrittr_1.5 dotCall64_1.0-0 Rcpp_1.0.0
[37] munsell_0.5.0 yaml_2.2.0 stringi_1.2.4
[40] plyr_1.8.4 grid_3.4.4 parallel_3.4.4
[43] promises_1.0.1 crayon_1.3.4 haven_2.0.0
[46] hms_0.4.2 knitr_1.21 pillar_1.3.0
[49] boot_1.3-20 rjson_0.2.20 codetools_0.2-15
[52] glue_1.3.0 evaluate_0.12 modelr_0.1.2
[55] spam_2.2-0 httpuv_1.4.5 RgoogleMaps_1.4.3
[58] cellranger_1.1.0 gtable_0.2.0 assertthat_0.2.0
[61] xfun_0.4 mime_0.6 xtable_1.8-3
[64] broom_0.5.1 e1071_1.7-0 coda_0.19-2
[67] later_0.7.5 class_7.3-14 viridisLite_0.3.0
[70] fields_9.6 units_0.6-2 bindrcpp_0.2.2
