Since a few days I get the following error when I try to open python that was installed with conda. The only thing that changed is that I changed the group of the files located in /software and gave the group read and write writes.
/software/local/share/bcbio/anaconda/bin/python: error while loading shared libraries: libpython2.7.so.1.0: cannot open shared object file: No such file or directory
I tried many different things. I first look at the output of ldd
ldd /software/local/share/bcbio/anaconda/bin/python
linux-vdso.so.1 => (0x00007ffd11bfc000)
libpython2.7.so.1.0 => /software/local/share/bcbio/anaconda/bin/../lib/libpython2.7.so.1.0 (0x00007f276fa9b000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00000036be600000)
libdl.so.2 => /lib64/libdl.so.2 (0x00000033bd800000)
libutil.so.1 => /lib64/libutil.so.1 (0x00000033bec00000)
libm.so.6 => /lib64/libm.so.6 (0x00000033be000000)
libc.so.6 => /lib64/libc.so.6 (0x00000033bd400000)
/lib64/ld-linux-x86-64.so.2 (0x00000033bd000000)
And looked at the permission of the librarie, which seemed to be correct:
ls -lah /software/local/share/bcbio/anaconda/bin/../lib/libpython2.7.so.1.0
-rwxrwsr-x+ 1 vsc lp_neuro 7.7M Jun 7 2018 /software/local/share/bcbio/anaconda/bin/../lib/libpython2.7.so.1.0
I also tried to export different environment variables:
export LD_LIBRARY_PATH=/software/local/share/bcbio/anaconda/bin/../lib/;
export PYTHONHOME=/software/local/share/bcbio/anaconda/bin/../lib/;
export PYTHONPATH=/software/local/share/bcbio/anaconda/bin/../lib/;
Since it is a conda installation of python, solutions needing root access (which I do not have) are of no uses. E.g. editing /etc/ld.so.conf is no option for me.
Is there a way to fix this issue?
