Answer 1: you should make two separate folder/repository structure for frontend and backend.
let's suppose your application grows fast at that time you want to scale your backend and you want to host your Angular app as static web app using Amazon-S3 so at that time it will be very easy to manage this.
May you want to use CICD, in that case also it will be good if your separate folder so you can create separate CICD jobs for backend and frontend.
May be your company hired some developer which is either expert in frontend or in backend only. in that case your company don't want give them unnecessary code access. so separate repo will be an easy option for this case. (this may be Depends on your team and company's approach for development)
Answer 2: I recommend go for es6 or es6+ features.
latest node.js version is supporting some of the features of es6. for example
- spread operator
- destructing
- classes (you can use OOPs)
- arrow functions
- let, const
- async await and etc
you can use babel if any other feature which is not supported by node.js. there could be may reason for using babel, but i want to know which specific feature do you want to use with babel? so i can explain according to that.