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I am looking to AllenSDK library. Can one extract time series (voltage of the cell in time) of the recordings they did to estimate various parameters? I can find how to access the parameters but I am really interested in their traces. Anyone can help with that?

Marta Gajowa
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1 Answers1

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Please refer to https://allensdk.readthedocs.io/en/latest/cell_types.html#feature-extraction to get dataset and the sweet metadata. Then you can access sweep timeseries like so:

for sweep_number in sweep_numbers:
    data = dataset.get_sweep(sweep_number)
    v = data['response'] * 1e3 # mV
    i = data['stimulus'] * 1e12 # pA
    hz = data['sampling_rate']
V0L1T10N
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