I want to update all Python modules.
On StackOverflow I found what I think is the best solution at this page.
Unfortunately if I run:
$ pip install pip-review
$ pip-review --local --interactive
Python works for a few minutes, downloading and collecting modules updates, then royally fails with error:
ERROR: Command errored out with exit status 1:
command: /usr/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-p9q7aft7/tables/setup.py'"'"'; __file__='"'"'/tmp/pip-install-p9q7aft7/tables/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-install-p9q7aft7/tables/pip-egg-info
cwd: /tmp/pip-install-p9q7aft7/tables/
Complete output (15 lines):
/tmp/H5closecy5usdpw.c:1:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
main (int argc, char **argv) {
^
/tmp/H5closecy5usdpw.c: In function ‘main’:
/tmp/H5closecy5usdpw.c:2:5: warning: implicit declaration of function ‘H5close’ [-Wimplicit-function-declaration]
H5close();
^
/usr/bin/ld: cannot find -lhdf5
collect2: error: ld returned 1 exit status
* Using Python 3.5.2 (default, Oct 8 2019, 13:06:37)
* USE_PKGCONFIG: True
.. ERROR:: Could not find a local HDF5 installation.
You may need to explicitly state where your local HDF5 headers and
library can be found by setting the ``HDF5_DIR`` environment
variable or by using the ``--hdf5`` command-line option.
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
I search for this error but it looks a general error to me and I don't know what direction to take in order to debug this problem.