I have a website hosted in IIS (site.domain.com) and a web application hosted under it (site.domain.com/app). when trying to access site.domain.com/app it gives missing Configuration Error - Could not load file or assembly from the main website web.config!!
Why accessing the web application goes through the main website!! it should be a separate entity.
The idea is to use the main website as a login page then having links to open the web applications under it.