Here we have a preview of a window in Scene Builder behind the actual result when run with Netbeans. You can also see that my minimum sizes are set to USE_PREF_SIZE, with the values being auto-filled when I adjust the size of the window. The size difference between the windows is the first obvious difference.
Further, you'll notice that everything inside the window is smaller as well, all buttons, tables, fonts, etc.
I'm using Netbeans 8.2, Scene Builder 11.0.0, and JDK 8 update 251. Any ideas?