I guess if you configure your persistence.xml file with that single entity, exclude all other unlisted entities, and then start your entity manager factory with the DDL auto generation enabled, you might get just that.
<persistence xmlns="http://java.sun.com/xml/ns/persistence" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://java.sun.com/xml/ns/persistence http://java.sun.com/xml/ns/persistence/persistence_2_0.xsd" version="2.0">
<persistence-unit name="stackoverflow" transaction-type="RESOURCE_LOCAL">
<class>com.stackoverflow.model.SingleEntity</class>
<exclude-unlisted-classes>true</exclude-unlisted-classes>
<properties>
<property name="hibernate.hbm2ddl.auto" value="create"/>
</properties>
</persistence-unit>
</persistence>