Translating Mapping long/lat code from R (sp pkg) to Python

Question

This is my first time asking question in Stack Overflow, I hope I am providing enough information.

Spyder 3.2.3 Python 3.6.2 64bits, Qt 5.6.2, PyQt5 5.6 on Windows 10

I have written code in R to identify and map clusters using Long/Lat

I am now tasked with translating it into Python language for which I am not even novice yet (can harldy spell python, lol.

Here is sample data: Actual number of records = 2350 and other non-essential columns for my immediate question needs

x <- tmp1[,c(4)]
head(x,n=15)

-79.86286 -81.47581 -73.99576 -91.58647 -82.05398 -76.72366 -87.31574 -122.73485 -89.61309 -87.70185 -70.97230 -73.79628 -73.74651 -96.82385 -112.01015

y <- tmp1[,c(5)]
head(y,n=15)

40.43981 31.21329 40.80918 42.07720 26.77963 39.95549 41.51222 42.37320 39.84502 42.07626 42.37230 41.21192 40.70294 32.41051 41.52537

Here is the first step of the process and where I encounter my first error: In Spyder I get this "colon" error

xy = r.SpatialPointsDataFrame(matrix(c(x,y), ncol=2), 
     r.data.frame(ID = r.seq(1:length(x))),
     proj4string=CRS("+proj=longlat +ellps=WGS84 +datum=WGS84"))

Error here: SyntaxError: invalid syntax data.frame(ID=seq(1:length(x))),

One of many links I have perused for help
Getting a Colon Syntax Error in Python

IN R it looks like this:

xy <- SpatialPointsDataFrame(matrix(c(x,y), ncol=2), data.frame(ID=seq(1:length(x))),
                         proj4string=CRS("+proj=longlat +ellps=WGS84 +datum=WGS84"))

I Tried with & w/o the :, with a , and no 1?

I have reviewed many links trying to get past this first step but have found no solution

I have tried to parse it out piece by piece and naturally get other errors as well.

r.data.frame(ID = r.seq(1:length(x)))

SyntaxError: invalid syntax

xy = r.SpatialPointsDataFrame(matrix(c(x,y), ncol=2), 
r.data.frame(ID = r.seq(1:length(x))),
proj4string=CRS("+proj=longlat +ellps=WGS84 +datum=WGS84"))

AttributeError: 'R' object has no attribute 'SpatialPointsDataFrame'''

https://rdrr.io/r/base/seq.html

xy = r.SpatialPointsDataFrame(matrix(c(x,y), ncol=2))

AttributeError: 'R' object has no attribute 'SpatialPointsDataFrame

proj4string=r.CRS("+proj=longlat +ellps=WGS84 +datum=WGS84")
proj4string=robjects.CRS("+proj=longlat +ellps=WGS84 +datum=WGS84")
proj4string=r.CRS("+proj=longlat +ellps=WGS84 +datum=WGS84")

AttributeError: module 'rpy2.robjects' has no attribute 'CRS

proj4string = CRS("+proj=longlat +ellps=WGS84 +datum=WGS84")

NameError: name 'CRS' is not defined

I believe I have followed all the preparation steps to work with R in Python using rpy2: Import rpy2 then Import R https://rpy2.github.io/doc/latest/html/robjects_rpackages.html https://rpy2.github.io/doc/v3.1.x/html/_modules/rpy2/robjects/packages.html

Using R inside python

import rpy2
print(rpy2.__version__)

3.3.3

https://rpy2.github.io/doc/latest/html/introduction.html Get necessary tools

import rpy2.robjects as robjects

from rpy2.robjects import DataFrame, Formula

import rpy2.robjects.packages as rpackages

from rpy2.robjects.packages import importr  

from rpy2.robjects import r   

utils = rpackages.importr('utils')

utils.chooseCRANmirror(ind=1)  
base = importr('base')

rpy2 - 'R' object has no attribute 'nls' Alternative Only

base = importr('base', robject_translations={'with': '_with'})

base

rpy2.robjects.packages.Package as a

stats = importr('stats')

Alternative Only

stats = importr('stats', robject_translations={'format_perc': '_format_perc'})

stats

rpy2.robjects.packages.Package as a

packnames = ('ggplot2', 
'usmap','geosphere','sp','rdgal','ggmap','maps','mapdata','ggcorrplot','reshape2','dplyr'
         ,'magrittr''devtools','proj4')

from rpy2.robjects.vectors import StrVector

utils.install_packages(StrVector(packnames))

Alternative Only: I have not used this yet

names_to_install = [x for x in packnames if not rpackages.isinstalled(x)]
if len(names_to_install) > 0:
utils.install_packages(StrVector(names_to_install))

https://rpy2.github.io/doc/latest/html/pandas.html

from rpy2.robjects.conversion import localconverter

from rpy2.robjects import pandas2ri

https://pandas.pydata.org/pandas-docs/version/0.22.0/r_interface.html

pandas2ri.activate()
import rpy2.robjects as ro

I hope someone can provide me with some direction.

Thank you.

WHP