I'd have to see some examples to be sure, but you may be getting unexpected values because of two's complement arithmetic. If the number has leading zeros (as it would in the case of 26), the ~ operator would flip these to make them leading ones - resulting in a negative number.
One possible workaround would be to use the Integer class:
int flipBits(int n){
String bitString = Integer.toBinaryString(n);
int i = 0;
while (bitString.charAt(i) != '1'){
i++;
}
bitString = bitString.substring(i, bitString.length());
for(i = 0; i < bitString.length(); i++){
if (bitString.charAt(i) == '0')
bitString.charAt(i) = '1';
else
bitString.charAt(i) = '0';
}
int result = 0, factor = 1;
for (int j = bitString.length()-1; j > -1; j--){
result += factor * bitString.charAt(j);
factor *= 2;
}
return result;
}
I don't have a java environment set up right now to test it on, but that's the general idea. Basically just convert the number to a string, cut off the leading zeros, flip the bits, and convert it back to a number. The Integer class may even have some way to parse a string into a binary number. I don't know if that's how the problem needs to be done, and it probably isn't the most efficient way to do it, but it would produce the correct result.
Edit: polygenlubricants' answer to this question may also be helpful