I am trying to fit multiple Gaussian curves to my experimental data. The Gaussian mixture model was obtained using sci-kit learn Mixture models. The GM fit over my experimental data is shown in the image below.
As you can see multiple Gaussian curves fit my data. However, I just wish to retain the two curves with the highest peak and wish to obtain the parameters of these two Gaussian curves such that I can independently plot these two specific Gaussian curves (Note that the mean and covariance alone is not enough to reproduce them, I also need to know the scaling parameter). Is there a way to do so? I have attached the code below.
import numpy as np
import matplotlib.pyplot as plt
import matplotlib
import matplotlib.ticker as ticker
from sklearn.mixture import GaussianMixture
import random as random
## Generating random data resembling experimental data
C1 = np.zeros(2000)
for c in range(2000):
if c<=400:
C1[c] = random.gauss(0.7, 0.2)
elif c<=600:
C1[c] = random.gauss(0.9,0.25)
elif c<= 800:
C1[c] = random.gauss(2.5,0.2)
elif c<= 1200:
C1[c] = random.gauss(1.5, 0.5)
elif c<=1600:
C1[c] = random.gauss(5,3.5)
elif c<2000:
C1[c] = random.gauss(10, 5)
C1[C1<0] = 0
C1 = np.sort(C1)
#### Plotting a normalised histogram
fig, ax = plt.subplots()
fig.set_figheight(10)
fig.set_figwidth(10)
n, bins, patches = ax.hist(C1,
bins = 250,align = 'mid', density = True,color = 'grey' )
""" Using machine Learning i.e Gaussian mixture models """
### Using GMM to predict different Gaussain Curves
X = np.array(C1)
gmm = GaussianMixture(n_components=6, random_state=0).fit(X.reshape(-1, 1))
labels = gmm.predict(X.reshape(-1,1))
gmm_y = np.exp(gmm.score_samples(X.reshape(-1, 1)))
ax.plot(X.reshape(-1,1), gmm_y, color="crimson", lw=2, label="GMM")
ax.tick_params(labelsize=26)
I found the answer to my question here. Thanks
