For my university, final-year dissertation, I am going to implement a compiler for a skeletal form of the C programming language, then go about extending it until it resembles something a little more like Java with array bounds checking, type-checking and so forth.
I am relatively competent at much of the theory that relates to compiler construction, and have experience programming in MIPS assembly language, so I do understand a little of what it is to write extremely low-level code.
My main concern is that I am likely to be able to get all the way to the point where I need to produce the actual machine-code output, but then not understand enough about how machine code is executed from the perspective of the operating system running it.
So, my actual question is basically, "does anyone know the best place to read up about writing assembly to run on an intel x86-64 processor under linux?"
The main gap in my knowledge is how the machine code is actually run in practise. Is it run directly on the processor, making "syscall"s (or the x86 equivalent) when it needs services provided by the kernel, or is the assembly language somehow an encapsulated description that tells the kernel how to execute the instructions (in a manner similar to an interpreted language such as Java)?
Any help you can provide would be greatly appreciated.