You cannot directly initialize arrays inside the program part.
That beeing said, the best option is porbably to define a constant containing the desired initialization values and then assigning the value of that constant to your array:
VAR
aiMyArray : ARRAY [1..2] OF INT;
END_VAR
VAR CONSTANT
aiInitializerMyArrayOptionA : ARRAY [1..2] OF INT := [1,2];
aiInitializerMyArrayOptionB : ARRAY [1..2] OF INT := [3,4];
END_VAR
IF bCondition THEN
aiMyArray := aiInitializerMyArrayOptionA;
ELSE
aiMyArray := aiInitializerMyArrayOptionB;
END_IF
The other option would be to manually initialize each index one by one which easily gets impracticale with decent array sizes:
IF bCondition THEN
aiMyArray[1] := 1;
aiMyArray[2] := 2;
ELSE
aiMyArray[1] := 3;
aiMyArray[2] := 4;
END_IF
Looping thorugh all elements and assigning values might be an option too. But that would only be usefull when the values are no arbitrary constatns but you are able to calculate the values from some formula.