biopython, Import error 'ModuleNotFoundError: No module named 'Bio''

Asked Jun 20 '21 at 09:54

Active Aug 07 '21 at 04:14

Viewed 1,165 times

I tried importing the file 'Bio' from the Biopython module to use the seqIO file.

from Bio import SeqIO
with open("uniprot.fa", "rt") as handle:
    for record in SeqIO.parse(handle, "fasta"):
        print(record.id)

the output showed an error:

Then I changed the path as advised

and the output showed another error

I'm confused plz help.

PS:I tried uninstalling and installing it again through pip and through zip file and I'm still facing this issue.

edited Aug 07 '21 at 04:14

merv

asked Jun 20 '21 at 09:54

aaron villian

How did you install BioPython? e.g. via pip or Conda? – Jan Wilamowski Jun 21 '21 at 05:01
I installed it using ' -pip install biopython ' – aaron villian Jun 21 '21 at 13:02
Do you have multiple version of pip and/or Python? You can check with `which pip` and `which python`. They should be located in the same directory, otherwise modules you install with pip won't be found by Python. – Jan Wilamowski Jun 22 '21 at 01:39
Does this answer your question? [biopython no module named Bio](https://stackoverflow.com/questions/49848517/biopython-no-module-named-bio) – fabianegli Jul 23 '21 at 12:25

0 Answers0